Welcome e-mails telling me what you are using Bio.PDB for. The article can be freely downloaded via the Bioinformatics journal Yes, and I’d appreciate it if you would refer to Bio.PDB in publications Judging from requests for features and information, Bio.PDB is also usedīy several LPCs (Large Pharmaceutical Companies :-). Has also been used to perform a large scale search for active sites similaritiesīetween protein structures in the PDB (see Proteins 51: 96–108,Īlgorithm that identifies linear secondary structure elements (see BMC That provides annotated protein structures ( not longer available?). Server that predicts disordered regions in proteins, and COLUMBA, a website Who’s using Bio.PDB?īio.PDB was used in the construction of DISEMBL, a web Bio.PDB’s Installationīio.PDB is automatically installed as part of Biopython. This document gives a fairlyĬomplete overview of Bio.PDB. The Biopython Structural Bioinformatics FAQ Introductionīio.PDB is a Biopython module that focuses on working with crystal
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